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BMS1 BMS1 ribosome biogenesis factor [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100339194, updated on 8-Mar-2024

Summary

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Gene symbol
BMS1
Gene description
BMS1 ribosome biogenesis factor
See related
Ensembl:ENSOCUG00000005354
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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Genomic context

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See BMS1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) Unplaced Scaffold NW_026259242.1 (2012927..2060087, complement)

NW_026259242.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103345529 Neighboring gene ret proto-oncogene Neighboring gene zinc finger protein 248 Neighboring gene uncharacterized LOC127482751

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026259242 Unplaced Scaffold Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U3 snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribosome biogenesis protein BMS1 homolog
Names
BMS1-like, ribosome assembly protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NW_026259242.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    2012927..2060087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008250050.3 → XP_008248272.1  ribosome biogenesis protein BMS1 homolog

    See identical proteins and their annotated locations for XP_008248272.1

    UniProtKB/TrEMBL
    A0A5F9CYU7, G1SNS1
    Related
    ENSOCUP00000004650.2
    Conserved Domains (4) summary
    smart00785
    Location:234 → 320
    AARP2CN; AARP2CN (NUC121) domain
    cd01882
    Location:47 → 276
    BMS1; Bms1, an essential GTPase, promotes assembly of preribosomal RNA processing complexes
    COG5192
    Location:8 → 1272
    BMS1; GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
    pfam04950
    Location:834 → 1104
    RIBIOP_C; 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

  2. XM_008250051.3 → XP_008248273.1  ribosome biogenesis protein BMS1 homolog

    See identical proteins and their annotated locations for XP_008248273.1

    UniProtKB/TrEMBL
    A0A5F9CYU7, G1SNS1
    Conserved Domains (4) summary
    smart00785
    Location:234 → 320
    AARP2CN; AARP2CN (NUC121) domain
    cd01882
    Location:47 → 276
    BMS1; Bms1, an essential GTPase, promotes assembly of preribosomal RNA processing complexes
    COG5192
    Location:8 → 1272
    BMS1; GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
    pfam04950
    Location:834 → 1104
    RIBIOP_C; 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

  3. XM_008250052.3 → XP_008248274.1  ribosome biogenesis protein BMS1 homolog

    See identical proteins and their annotated locations for XP_008248274.1

    UniProtKB/TrEMBL
    A0A5F9CYU7, G1SNS1
    Related
    ENSOCUP00000038997.1
    Conserved Domains (4) summary
    smart00785
    Location:234 → 320
    AARP2CN; AARP2CN (NUC121) domain
    cd01882
    Location:47 → 276
    BMS1; Bms1, an essential GTPase, promotes assembly of preribosomal RNA processing complexes
    COG5192
    Location:8 → 1272
    BMS1; GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
    pfam04950
    Location:834 → 1104
    RIBIOP_C; 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

  4. XM_008250049.3 → XP_008248271.1  ribosome biogenesis protein BMS1 homolog

    See identical proteins and their annotated locations for XP_008248271.1

    UniProtKB/TrEMBL
    A0A5F9CYU7, G1SNS1
    Conserved Domains (4) summary
    smart00785
    Location:234 → 320
    AARP2CN; AARP2CN (NUC121) domain
    cd01882
    Location:47 → 276
    BMS1; Bms1, an essential GTPase, promotes assembly of preribosomal RNA processing complexes
    COG5192
    Location:8 → 1272
    BMS1; GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
    pfam04950
    Location:834 → 1104
    RIBIOP_C; 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
Nucleotide Protein
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