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CLEC16A C-type lectin domain containing 16A [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100339140, updated on 8-Mar-2024

Summary

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Gene symbol
CLEC16A
Gene description
C-type lectin domain containing 16A
See related
Ensembl:ENSOCUG00000006217
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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Genomic context

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See CLEC16A in Genome Data Viewer
Location:
chromosome: 6
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 6 NC_067379.1 (4593954..4803068)

Chromosome 6 - NC_067379.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103348551 Neighboring gene Dexi homolog Neighboring gene suppressor of cytokine signaling 1 Neighboring gene transition protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067379.1 Chromosome 6 Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endolysosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein CLEC16A
Names
C-type lectin domain family 16 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NC_067379.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    4593954..4803068
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051847427.1 → XP_051703387.1  protein CLEC16A isoform X2

  2. XM_051847426.1 → XP_051703386.1  protein CLEC16A isoform X1

  3. XM_051847433.1 → XP_051703393.1  protein CLEC16A isoform X7

  4. XM_051847430.1 → XP_051703390.1  protein CLEC16A isoform X4

  5. XM_051847428.1 → XP_051703388.1  protein CLEC16A isoform X3

  6. XM_051847432.1 → XP_051703392.1  protein CLEC16A isoform X6

  7. XM_051847434.1 → XP_051703394.1  protein CLEC16A isoform X8

  8. XM_051847431.1 → XP_051703391.1  protein CLEC16A isoform X5

Nucleotide Protein
Heading Accession and Version

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