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grsf1 G-rich RNA sequence binding factor 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100337653, updated on 17-Aug-2024

Summary

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Official Symbol
grsf1provided by Xenbase
Official Full Name
G-rich RNA sequence binding factor 1provided by Xenbase
Primary source
Xenbase:XB-GENE-965150
See related
Ensembl:ENSXETG00000013850
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See grsf1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (82469708..82499657)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (77244033..77264219)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone Neighboring gene cytochrome P450 family 27 subfamily A member 1 gene 3 Neighboring gene provisional ortholog of cytochrome P450 family 27 subfamily A member 1 Neighboring gene G-rich sequence factor 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC186196

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
G-rich sequence factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001172302.1 → NP_001165773.1  G-rich sequence factor 1

    See identical proteins and their annotated locations for NP_001165773.1

    Status: PROVISIONAL

    Source sequence(s)
    BC167701
    UniProtKB/TrEMBL
    B3DM49, F6TH79
    Related
    ENSXETP00000110880.1, ENSXETT00000107262.1
    Conserved Domains (3) summary
    cd12505
    Location:117 → 194
    RRM2_GRSF1; RNA recognition motif 2 (RRM2) found in G-rich sequence factor 1 (GRSF-1) and similar proteins
    cd12730
    Location:1 → 79
    RRM1_GRSF1; RNA recognition motif 1 (RRM1) found in G-rich sequence factor 1 (GRSF-1) and similar proteins
    cd12733
    Location:268 → 343
    RRM3_GRSF1; RNA recognition motif 3 (RRM3) found in G-rich sequence factor 1 (GRSF-1) and similar proteins

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    82469708..82499657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031892565.1 → XP_031748425.1  G-rich sequence factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A803K985, F6YIH2
    Related
    ENSXETP00000104917.1, ENSXETT00000124604.1
    Conserved Domains (3) summary
    cd12505
    Location:209 → 286
    RRM2_GRSF1; RNA recognition motif 2 (RRM2) found in G-rich sequence factor 1 (GRSF-1) and similar proteins
    cd12730
    Location:93 → 171
    RRM1_GRSF1; RNA recognition motif 1 (RRM1) found in G-rich sequence factor 1 (GRSF-1) and similar proteins
    cd12733
    Location:360 → 435
    RRM3_GRSF1; RNA recognition motif 3 (RRM3) found in G-rich sequence factor 1 (GRSF-1) and similar proteins

  2. XM_031892566.1 → XP_031748426.1  G-rich sequence factor 1 isoform X2

    UniProtKB/TrEMBL
    B3DM49, F6TH79
    Related
    ENSXETP00000107395.1, ENSXETT00000117897.1
    Conserved Domains (3) summary
    cd12505
    Location:117 → 194
    RRM2_GRSF1; RNA recognition motif 2 (RRM2) found in G-rich sequence factor 1 (GRSF-1) and similar proteins
    cd12730
    Location:1 → 79
    RRM1_GRSF1; RNA recognition motif 1 (RRM1) found in G-rich sequence factor 1 (GRSF-1) and similar proteins
    cd12733
    Location:268 → 343
    RRM3_GRSF1; RNA recognition motif 3 (RRM3) found in G-rich sequence factor 1 (GRSF-1) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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