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rangap1.S Ran GTPase activating protein 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100337588, updated on 17-Aug-2024

Summary

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Official Symbol
rangap1.S
Official Full Name
Ran GTPase activating protein 1 S homeolog
Primary source
Xenbase:XB-GENE-6464329
Locus tag
XELAEV_18025680mg
See related
EnsemblRapid:ENSXLAG00005005635
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
fug1; rna1p; RanGAP1; rangap1b; rangap1-a; rangap1-b
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Genomic context

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Location:
chromosome: 4S
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (100959857..100983383, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (94637064..94660649, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 134 S homeolog Neighboring gene small G protein signaling modulator 3 S homeolog Neighboring gene uncharacterized LOC121393346 Neighboring gene zinc finger CCCH-type containing 7B S homeolog Neighboring gene thyrotrophic embryonic factor S homeolog Neighboring gene galanin receptor 3 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RanBP2 associates with Ubc9p and a modified form of RanGAP1. Saitoh H, et al. Proc Natl Acad Sci U S A, 1997 Apr 15. PMID 9108047, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC154793

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
  
located_in chromosome, centromeric region IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in kinetochore IEA
Inferred from Electronic Annotation
more info
  
colocalizes_with kinetochore ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in nuclear envelope IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in spindle IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ran GTPase-activating protein 1
Names
Ran GTPase activating protein 1 b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001172197.1 → NP_001165668.1  ran GTPase-activating protein 1

    See identical proteins and their annotated locations for NP_001165668.1

    Status: PROVISIONAL

    Source sequence(s)
    BC126016
    UniProtKB/TrEMBL
    A0A974D2H7, A0JMV1
    Related
    ENSXLAP00005016665.1, ENSXLAT00005016961.1
    Conserved Domains (3) summary
    cd00116
    Location:21 → 358
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:51 → 81
    LRR_RI; leucine-rich repeat [structural motif]
    pfam07834
    Location:408 → 583
    RanGAP1_C; RanGAP1 C-terminal domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    100959857..100983383 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O13066.1 GenPept UniProtKB/Swiss-Prot:O13066

Gene LinkOut

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Molecular Biology Databases
Research Materials