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znf585b.L zinc finger protein 585B L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100337584, updated on 4-Nov-2024

Summary

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Official Symbol
znf585b.L
Official Full Name
zinc finger protein 585B L homeolog
Primary source
Xenbase:XB-GENE-6464333
Locus tag
XELAEV_18030359mg
See related
EnsemblRapid:ENSXLAG00005034738 AllianceGenome:Xenbase:XB-GENE-6464333
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
xfdl156; znf585b; xfdl156b; znf585b-a; znf585b-b; znf585b.S
Summary
Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See znf585b.L in Genome Data Viewer
Location:
chromosome: 6L
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (2324940..2334066)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (298219..302552)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 239-like Neighboring gene oocyte zinc finger protein XlCOF15-like Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene uncharacterized LOC100301958 Neighboring gene uncharacterized XB5904899 L homeolog Neighboring gene oocyte zinc finger protein XlCOF6-like Neighboring gene uncharacterized LOC121394795

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcription regulation and alternative splicing of an early zygotic gene encoding two structurally distinct zinc finger proteins in Xenopus laevis. Bellefroid E, et al. Mech Dev, 1997 Apr. PMID 9178260
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 585B L homeolog
Names
XFDL 156
zinc finger protein 585B S homeolog
zing finger protein XFDL156 b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001172134.1 → NP_001165605.1  zinc finger protein 585B L homeolog

    See identical proteins and their annotated locations for NP_001165605.1

    Status: PROVISIONAL

    Source sequence(s)
    U67076
    UniProtKB/TrEMBL
    P70045
    Conserved Domains (6) summary
    COG5048
    Location:115 → 561
    COG5048; FOG: Zn-finger [General function prediction only]
    TIGR04104
    Location:475 → 515
    cxxc_20_cxxc; cxxc_20_cxxc protein
    sd00017
    Location:337 → 357
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:349 → 374
    zf-H2C2_2; Zinc-finger double domain
    pfam14353
    Location:503 → 548
    CpXC; CpXC protein
    cl19727
    Location:266 → 317
    DUF1451; Zinc-ribbon containing domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    2324940..2334066
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041565214.1 → XP_041421148.1  zinc finger protein 585B L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8FUD8, A0A974HEN4
    Related
    ENSXLAP00005103814.1, ENSXLAT00005105833.1
    Conserved Domains (2) summary
    COG5048
    Location:114 → 561
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:310 → 330
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_041565213.1 → XP_041421147.1  zinc finger protein 585B L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8FUD8, A0A974HEN4
    Related
    ENSXLAP00005103797.1, ENSXLAT00005105816.1
    Conserved Domains (2) summary
    COG5048
    Location:114 → 561
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:310 → 330
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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