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mex3a mex-3 RNA binding family member A [ Danio rerio (zebrafish) ]

Gene ID: 100332760, updated on 12-Sep-2024

Summary

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Official Symbol
mex3aprovided by ZNC
Official Full Name
mex-3 RNA binding family member Aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-130201-1
See related
Ensembl:ENSDARG00000076638 AllianceGenome:ZFIN:ZDB-GENE-130201-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Is expressed in brain; olfactory epithelium; optic tectum; and retina. Orthologous to human MEX3A (mex-3 RNA binding family member A). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See mex3a in Genome Data Viewer
Location:
chromosome: 16
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (46752304..46766175, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (46788712..46799776, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene RAB25, member RAS oncogene family b Neighboring gene RAB11a, member RAS oncogene family, like Neighboring gene uncharacterized LOC100535095 Neighboring gene uncharacterized LOC101886350

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RNA-seq of the aging brain in the short-lived fish N. furzeri - conserved pathways and novel genes associated with neurogenesis. Baumgart M, et al. Aging Cell, 2014 Dec. PMID 25059688, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RNA-binding protein MEX3A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    46752304..46766175 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009292667.4 → XP_009290942.1  RNA-binding protein MEX3A

    UniProtKB/TrEMBL
    A0A8M3ATU8, E7EXM9
    Related
    ENSDARP00000098515.2, ENSDART00000115244.4
    Conserved Domains (2) summary
    cd00105
    Location:209 → 269
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam13920
    Location:451 → 496
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
Nucleotide Protein
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