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b3gat1b beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) b [ Danio rerio (zebrafish) ]

Gene ID: 100332644, updated on 17-Sep-2024

Summary

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Official Symbol
b3gat1bprovided by ZNC
Official Full Name
beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-131101-1
See related
Ensembl:ENSDARG00000113928 AllianceGenome:ZFIN:ZDB-GENE-131101-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable hydrolase activity, hydrolyzing O-glycosyl compounds. Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human B3GAT1 (beta-1,3-glucuronyltransferase 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See b3gat1b in Genome Data Viewer
Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (39154667..39179826)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (39211442..39237089)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene DNA ligase 1-like Neighboring gene ribosomal protein S25 Neighboring gene solute carrier family 37 member 4b Neighboring gene beta-galactosidase-1-like protein 2 Neighboring gene EI24 autophagy associated transmembrane protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    39154667..39179826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005169207.5 → XP_005169264.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1

    See identical proteins and their annotated locations for XP_005169264.1

    UniProtKB/TrEMBL
    A0A2R8QJ91, A0A8M2BH40
    Conserved Domains (1) summary
    pfam03360
    Location:106 → 315
    Glyco_transf_43; Glycosyltransferase family 43

  2. XM_068224012.1 → XP_068080113.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1

    Related
    ENSDARP00000153089.1, ENSDART00000188997.1
Nucleotide Protein Strain
Heading Accession and Version

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