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ephx4 epoxide hydrolase 4 [ Danio rerio (zebrafish) ]

Gene ID: 100331939, updated on 2-Nov-2024

Summary

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Official Symbol
ephx4provided by ZNC
Official Full Name
epoxide hydrolase 4provided by ZNC
Primary source
ZFIN:ZDB-GENE-080227-1
See related
Ensembl:ENSDARG00000099515 AllianceGenome:ZFIN:ZDB-GENE-080227-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable hydrolase activity. Predicted to be located in membrane. Orthologous to human EPHX4 (epoxide hydrolase 4). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See ephx4 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (24329964..24358578, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (24229743..24259060, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene protein FAM13A-like Neighboring gene uncharacterized LOC137490209 Neighboring gene bromodomain, testis-specific Neighboring gene transforming growth factor, beta receptor III Neighboring gene uncharacterized LOC137495882

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
enables epoxide hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
epoxide hydrolase 4
Names
abhd7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    24329964..24358578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021477109.2 → XP_021332784.1  epoxide hydrolase 4

    UniProtKB/TrEMBL
    A0A0R4ILH2, A0A8M9PF14
    Related
    ENSDARP00000136910.1, ENSDART00000159595.2
    Conserved Domains (1) summary
    COG0596
    Location:80 → 354
    MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394641.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    49327..77941 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002662423.6 → XP_002662469.1  epoxide hydrolase 4

    UniProtKB/TrEMBL
    A0A0R4ILH2, A0A8M9PF14
    Conserved Domains (1) summary
    COG0596
    Location:80 → 354
    MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395254.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    53723..80087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021474092.2 → XP_021329767.1  epoxide hydrolase 4

    UniProtKB/TrEMBL
    A0A0R4ILH2, A0A8M9PF14
    Conserved Domains (1) summary
    COG0596
    Location:80 → 354
    MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]
Nucleotide Protein Strain
Heading Accession and Version

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