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si:ch211-152c8.5 si:ch211-152c8.5 [ Danio rerio (zebrafish) ]

Gene ID: 100330524, updated on 12-Sep-2024

Summary

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Official Symbol
si:ch211-152c8.5provided by ZNC
Official Full Name
si:ch211-152c8.5provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5764
See related
Ensembl:ENSDARG00000104576 AllianceGenome:ZFIN:ZDB-GENE-030131-5764
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fi17a12; ppp1r3g; wu:fi17a12
Summary
Predicted to enable glycogen binding activity and protein phosphatase 1 binding activity. Predicted to be involved in regulation of glycogen biosynthetic process. Predicted to be part of protein phosphatase type 1 complex. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See si:ch211-152c8.5 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (2826218..2829105, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (2827474..2830399, complement)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene neuritin 1a Neighboring gene phenylalanyl-tRNA synthetase 2, mitochondrial Neighboring gene LYR motif containing 4 Neighboring gene si:ch211-152c8.2 Neighboring gene cytochrome b5 type A (microsomal)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables glycogen binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein phosphatase 1 binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of glycogen biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of protein phosphatase type 1 complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
protein phosphatase 1 regulatory subunit 3G
Names
protein phosphatase 1, regulatory subunit 3G

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    2826218..2829105 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005162938.5 → XP_005162995.1  protein phosphatase 1 regulatory subunit 3G

    UniProtKB/TrEMBL
    A0A8M2B9X2
    Related
    ENSDARP00000132511.1, ENSDART00000164913.2
    Conserved Domains (1) summary
    cl23798
    Location:171 → 269
    CBM_21; Carbohydrate/starch-binding module (family 21)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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