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rufy1 RUN and FYVE domain containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 100330077, updated on 12-Sep-2024

Summary

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Official Symbol
rufy1provided by ZNC
Official Full Name
RUN and FYVE domain containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-090421-4
See related
Ensembl:ENSDARG00000078685 AllianceGenome:ZFIN:ZDB-GENE-090421-4
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable metal ion binding activity. Orthologous to human RUFY1 (RUN and FYVE domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See rufy1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (7014549..7045004, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (6710384..6738459, complement)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A/Ba Neighboring gene eukaryotic translation initiation factor 4E binding protein 3, like Neighboring gene heterogeneous nuclear ribonucleoprotein H1 Neighboring gene heparin-binding EGF-like growth factor a Neighboring gene si:ch73-43g23.1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RUN and FYVE domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    7014549..7045004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068213299.1 → XP_068069400.1  RUN and FYVE domain-containing protein 1 isoform X2

  2. XM_002667315.7 → XP_002667361.2  RUN and FYVE domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M1RN01, E7FE23
    Related
    ENSDARP00000101331.2, ENSDART00000112082.4
    Conserved Domains (3) summary
    cd15758
    Location:624 → 694
    FYVE_RUFY1; FYVE domain found in RUN and FYVE domain-containing protein 1 (RUFY1) and similar proteins
    pfam02759
    Location:136 → 260
    RUN; RUN domain
    cl23849
    Location:279 → 525
    TrbI; Bacterial conjugation TrbI-like protein
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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