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MGYG_01688 DNA repair protein Rad50 [ Nannizzia gypsea CBS 118893 ]

Gene ID: 10032954, updated on 31-Oct-2024

Summary

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Gene symbol
MGYG_01688
Gene description
DNA repair protein Rad50
Locus tag
MGYG_01688
See related
FungiDB:MGYG_01688; VEuPathDB:MGYG_01688
Gene type
protein coding
RNA name
DNA repair protein Rad50
RefSeq status
PROVISIONAL
Organism
Nannizzia gypsea CBS 118893 (strain: CBS 118893)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Arthrodermataceae; Nannizzia
Orthologs
Aspergillus fumigatus all
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Genomic context

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See MGYG_01688 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
7

NW_003345201.1Genomic Context describing neighboring genes Neighboring gene histone acetyltransferase gcn5 Neighboring gene DNA repair exonuclease rad1 Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003345201.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables G-quadruplex DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA duplex unwinding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chromosome organization involved in meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere maintenance via recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere maintenance via telomerase IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Mre11 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in condensed nuclear chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
DNA repair protein Rad50

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003345201.1 Reference assembly

    Range
    4603309..4607527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003177571.1 → XP_003177619.1  DNA repair protein Rad50 [Nannizzia gypsea CBS 118893]

    See identical proteins and their annotated locations for XP_003177619.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E5R2K9
    Conserved Domains (2) summary
    TIGR00606
    Location:7 → 1270
    rad50; rad50
    cd03240
    Location:1161 → 1264
    ABC_Rad50; ATP-binding cassette domain of Rad50
Nucleotide Protein
Heading Accession and Version

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