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si:dkey-234i14.2 si:dkey-234i14.2 [ Danio rerio (zebrafish) ]

Gene ID: 100329265, updated on 2-Nov-2024

Summary

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Official Symbol
si:dkey-234i14.2provided by ZNC
Official Full Name
si:dkey-234i14.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-131127-595
See related
Ensembl:ENSDARG00000097652 AllianceGenome:ZFIN:ZDB-GENE-131127-595
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable RNA binding activity. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See si:dkey-234i14.2 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (37192287..37204976, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (36622468..36634502, complement)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene tudor domain containing 12 Neighboring gene urate (5-hydroxyiso-) hydrolase b Neighboring gene si:dkey-234i14.3 Neighboring gene golgi glycoprotein 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
RNA-binding Raly-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    37192287..37204976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005163216.5 → XP_005163273.1  RNA-binding Raly-like protein

    UniProtKB/TrEMBL
    A0A8M2BAE5
    Related
    ENSDARP00000128151.1, ENSDART00000155620.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials