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LOC100329178 interferon gamma [ Salmo salar (Atlantic salmon) ]

Gene ID: 100329178, updated on 30-Nov-2023

Summary

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Gene symbol
LOC100329178
Gene description
interferon gamma
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC100329178 in Genome Data Viewer
Location:
chromosome: ssa07
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa07 NC_059448.1 (59878159..59899430)

Chromosome ssa07 - NC_059448.1Genomic Context describing neighboring genes Neighboring gene nuclear protein MDM1-like Neighboring gene nuclear protein MDM1-like Neighboring gene dual specificity tyrosine-phosphorylation-regulated kinase 2-like Neighboring gene uncharacterized LOC123743858

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059448.1 Chromosome ssa07 Reference Ssal_v3.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables type II interferon receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001171804.1 → NP_001165275.1  interferon gamma precursor

    See identical proteins and their annotated locations for NP_001165275.1

    Status: PROVISIONAL

    Source sequence(s)
    FJ263446
    UniProtKB/TrEMBL
    D2D0D7

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059448.1 Reference Ssal_v3.1

    Range
    59878159..59899430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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