U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100316882 starch synthase III [ Solanum lycopersicum (tomato) ]

Gene ID: 100316882, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
LOC100316882
Gene description
starch synthase III
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100316882 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
16
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 2 NC_015439.3 (45313386..45330559)
102 previous assembly SL2.50 (GCF_000188115.3) 2 NC_015439.2 (44758150..44775323)

Chromosome 2 - NC_015439.3Genomic Context describing neighboring genes Neighboring gene peroxidase 42 Neighboring gene ATP synthase gamma chain, chloroplastic Neighboring gene uncharacterized LOC101252739 Neighboring gene microRNA MIR171b

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
starch synthase III

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247694.1 → NP_001234623.1  starch synthase III

    See identical proteins and their annotated locations for NP_001234623.1

    Status: PROVISIONAL

    Source sequence(s)
    GQ221265
    UniProtKB/TrEMBL
    C6KI36
    Conserved Domains (4) summary
    cd03791
    Location:781 → 1224
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
    PLN02316
    Location:71 → 1228
    PLN02316; synthase/transferase
    pfam13863
    Location:434 → 493
    DUF4200; Domain of unknown function (DUF4200)
    pfam16760
    Location:685 → 773
    CBM53; Starch/carbohydrate-binding module (family 53)

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015439.3 Reference SL3.0 Primary Assembly

    Range
    45313386..45330559
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases