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ru1c U1 small nuclear ribonucleoprotein C [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100305165, updated on 14-Dec-2023

Summary

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Gene symbol
ru1c
Gene description
U1 small nuclear ribonucleoprotein C
See related
Ensembl:ENSOMYG00000034165
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See ru1c in Genome Data Viewer
Location:
chromosome: 16
Exon count:
6
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 16 NC_048580.1 (49197344..49201968)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 16 NC_035092.1 (45806293..45810899)

Chromosome 16 - NC_048580.1Genomic Context describing neighboring genes Neighboring gene SAM pointed domain-containing Ets transcription factor Neighboring gene protein ILRUN Neighboring gene UHRF1-binding protein 1 Neighboring gene uncharacterized LOC110492191

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pre-mRNA 5'-splice site binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 5'-splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U1 small nuclear ribonucleoprotein C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001165069.1 → NP_001158541.1  U1 small nuclear ribonucleoprotein C

    See identical proteins and their annotated locations for NP_001158541.1

    Status: PROVISIONAL

    Source sequence(s)
    BT073781
    UniProtKB/TrEMBL
    C1BGQ2
    Related
    ENSOMYP00000073875.1, ENSOMYT00000080433.2
    Conserved Domains (1) summary
    pfam06220
    Location:1 → 38
    zf-U1; U1 zinc finger

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048580.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    49197344..49201968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials