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aars1 alanyl-tRNA synthetase 1 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100304928, updated on 20-Aug-2024

Summary

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Gene symbol
aars1
Gene description
alanyl-tRNA synthetase 1
See related
EnsemblRapid:ENSIPUG00020020535
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
aars
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Genomic context

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See aars1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 4 NC_071284.1 (12722975..12741563, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) Y NC_061155.1 (14189363..14207771, complement)

Chromosome 4 - NC_071284.1Genomic Context describing neighboring genes Neighboring gene splicing factor 3b, subunit 3 Neighboring gene small nucleolar RNA SNORD111 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 2 Neighboring gene transglutaminase 2, like Neighboring gene plasmolipin Neighboring gene ADP-ribosylation factor-like 2 binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alanine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables amino acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alanyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alanine--tRNA ligase, cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_071284.1 Reference Coco_2.0 Primary Assembly

    Range
    12722975..12741563 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017466276.3 → XP_017321765.2  alanine--tRNA ligase, cytoplasmic isoform X2

    UniProtKB/TrEMBL
    A0A2D0QVK5, W5UL72

  2. XM_047152932.2 → XP_047008888.1  alanine--tRNA ligase, cytoplasmic isoform X1

    UniProtKB/TrEMBL
    A0A979E4M5
    Related
    ENSIPUP00020040933.1, ENSIPUT00020049561.1

  3. XM_017466277.3 → XP_017321766.2  alanine--tRNA ligase, cytoplasmic isoform X2

    UniProtKB/TrEMBL
    A0A2D0QVK5, W5UL72
    Related
    ENSIPUP00020040926.1, ENSIPUT00020049554.1
Nucleotide Protein
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