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Gm17455 predicted gene, 17455 [ Mus musculus (house mouse) ]

Gene ID: 100302688, updated on 17-Aug-2024

Summary

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Official Symbol
Gm17455provided by MGI
Official Full Name
predicted gene, 17455provided by MGI
Primary source
MGI:MGI:4937089
See related
Ensembl:ENSMUSG00000090439 AllianceGenome:MGI:4937089
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C10orf105 (chromosome 10 open reading frame 105). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
human all
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Genomic context

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Location:
10 B4; 10 30.45 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (60235643..60239338)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (60399493..60403559)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr10:59692925-59693225 Neighboring gene STARR-positive B cell enhancer ABC_E2325 Neighboring gene STARR-seq mESC enhancer starr_26804 Neighboring gene headcase homolog pseudogene Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:59740166-59740349 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:59747447-59747650 Neighboring gene prosaposin Neighboring gene STARR-positive B cell enhancer mm9_chr10:59809490-59809791 Neighboring gene cadherin related 23 (otocadherin) Neighboring gene STARR-positive B cell enhancer ABC_E2938 Neighboring gene STARR-positive B cell enhancer ABC_E3887 Neighboring gene STARR-positive B cell enhancer ABC_E9790 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:59843957-59844174 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:59852391-59852643 Neighboring gene V-set immunoregulatory receptor Neighboring gene STARR-positive B cell enhancer ABC_E6857 Neighboring gene STARR-seq mESC enhancer starr_26807 Neighboring gene STARR-positive B cell enhancer ABC_E6858 Neighboring gene STARR-positive B cell enhancer ABC_E6859 Neighboring gene predicted gene, 51803 Neighboring gene predicted gene, 57560

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein C10orf105 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164374.2 → NP_001157846.1  uncharacterized protein C10orf105 homolog

    See identical proteins and their annotated locations for NP_001157846.1

    Status: VALIDATED

    Source sequence(s)
    AC079082
    Consensus CDS
    CCDS48570.1
    UniProtKB/TrEMBL
    G3UW87
    Related
    ENSMUSP00000129705.2, ENSMUST00000164428.3
    Conserved Domains (1) summary
    pfam17665
    Location:1 → 128
    DUF5527; Family of unknown function (DUF5527)

  2. NM_001399669.1 → NP_001386598.1  uncharacterized protein C10orf105 homolog

    Status: VALIDATED

    Source sequence(s)
    AC079082
    UniProtKB/TrEMBL
    G3UW87

  3. NM_001399671.1 → NP_001386600.1  uncharacterized protein C10orf105 homolog

    Status: VALIDATED

    Source sequence(s)
    AC079082
    UniProtKB/TrEMBL
    G3UW87

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    60235643..60239338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006512962.5 → XP_006513025.2  uncharacterized protein C10orf105 homolog isoform X1

    UniProtKB/TrEMBL
    G3UW87
    Conserved Domains (1) summary
    pfam17665
    Location:1 → 128
    DUF5527; Family of unknown function (DUF5527)

  2. XM_006512964.5 → XP_006513027.1  uncharacterized protein C10orf105 homolog isoform X1

    See identical proteins and their annotated locations for XP_006513027.1

    UniProtKB/TrEMBL
    G3UW87
    Conserved Domains (1) summary
    pfam17665
    Location:1 → 128
    DUF5527; Family of unknown function (DUF5527)
Nucleotide Protein Strain
Heading Accession and Version

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