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Gm11944 predicted gene 11944 [ Mus musculus (house mouse) ]

Gene ID: 100302648, updated on 17-Aug-2024

Summary

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Official Symbol
Gm11944provided by MGI
Official Full Name
predicted gene 11944provided by MGI
Primary source
MGI:MGI:3702312
See related
Ensembl:ENSMUSG00000084941 AllianceGenome:MGI:3702312
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in bladder adult (RPKM 11.9), kidney adult (RPKM 10.3) and 24 other tissues See more
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Genomic context

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See Gm11944 in Genome Data Viewer
Location:
11 A1; 11 2.32 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (3259000..3270722)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (3309000..3320722)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene Sfi1 homolog, spindle assembly associated (yeast) Neighboring gene STARR-positive B cell enhancer ABC_E6943 Neighboring gene eukaryotic translation initiation factor 4E nuclear import factor 1 Neighboring gene predicted gene, 51877 Neighboring gene STARR-seq mESC enhancer starr_28343 Neighboring gene developmentally regulated GTP binding protein 1 Neighboring gene STARR-seq mESC enhancer starr_28345 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:3214183-3214292 Neighboring gene POZ (BTB) and AT hook containing zinc finger 1 Neighboring gene predicted gene 12592 Neighboring gene STARR-positive B cell enhancer ABC_E5203 Neighboring gene STARR-positive B cell enhancer ABC_E2345 Neighboring gene STARR-positive B cell enhancer ABC_E3929 Neighboring gene STARR-seq mESC enhancer starr_28349 Neighboring gene phosphoinositide-3-kinase interacting protein 1 Neighboring gene STARR-seq mESC enhancer starr_28351 Neighboring gene LIM domain kinase 2 Neighboring gene STARR-positive B cell enhancer ABC_E1818 Neighboring gene predicted gene, 51879

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045708.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL671968
    Related
    ENSMUST00000152576.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    3259000..3270722
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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