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MIR548H3 microRNA 548h-3 [ Homo sapiens (human) ]

Gene ID: 100302287, updated on 10-Oct-2023

Summary

Official Symbol
MIR548H3provided by HGNC
Official Full Name
microRNA 548h-3provided by HGNC
Primary source
HGNC:HGNC:35344
See related
Ensembl:ENSG00000221698 miRBase:MI0006413; AllianceGenome:HGNC:35344
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MIR548H-3; MIRN548H3; hsa-mir-548h-3
Summary
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Annotation information
Note: MIR548H3 (GeneID 100302287) was annotated incorrectly on NCBI's Build 37.2. Its correct location is chr17: 13446846-13446963 (-). [17 Jun 2014]
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Genomic context

Location:
17p12
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (13543529..13543646, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (13450707..13450824, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (13446846..13446963, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904097 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr17:13250372-13251571 Neighboring gene uncharacterized LOC105371543 Neighboring gene NANOG hESC enhancer GRCh37_chr17:13266032-13266533 Neighboring gene heparan sulfate-glucosamine 3-sulfotransferase 3A1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:13459681-13460196 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:13478826-13479326 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:13479327-13479827 Neighboring gene MPRA-validated peak2737 silencer Neighboring gene MPRA-validated peak2739 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:13504200-13504820 Neighboring gene Sharpr-MPRA regulatory region 12003 Neighboring gene uncharacterized LOC105371544 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:13536554-13537054 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:13537055-13537555 Neighboring gene NANOG hESC enhancer GRCh37_chr17:13543773-13544290 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:13545849-13546650 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:13546651-13547452 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:13574799-13575300 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:13575301-13575800 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:13654264-13654764 Neighboring gene MPRA-validated peak2744 silencer Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47013 Neighboring gene uncharacterized LOC107985014

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of RISC complex IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_031679.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AC005411
    Related
    ENST00000408771.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    13543529..13543646 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    13450707..13450824 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)