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MIR2054 microRNA 2054 [ Homo sapiens (human) ]

Gene ID: 100302267, updated on 10-Oct-2023

Summary

Official Symbol
MIR2054provided by HGNC
Official Full Name
microRNA 2054provided by HGNC
Primary source
HGNC:HGNC:37070
See related
Ensembl:ENSG00000283550 miRBase:MI0010488; AllianceGenome:HGNC:37070
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
hsa-mir-2054
Summary
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
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Genomic context

Location:
4q28.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (125507259..125507307)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (128809584..128809632)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (126428414..126428462)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancers GRCh37_chr4:125633295-125633860 and GRCh37_chr4:125633861-125634426 Neighboring gene ankyrin repeat domain containing 50 Neighboring gene NANOG hESC enhancer GRCh37_chr4:126189240-126189741 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:126246738-126247342 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:126278491-126279282 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:126279283-126280072 Neighboring gene FAT atypical cadherin 4 Neighboring gene VISTA enhancer hs1389 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:126482433-126483184 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:126488021-126488685 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:126557979-126558480 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:126558481-126558980 Neighboring gene transmembrane protein 248 pseudogene 1 Neighboring gene nucleoporin 58 pseudogene 1

Genomic regions, transcripts, and products

Phenotypes

EBI GWAS Catalog

Description
A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_031746.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AC092629
    Related
    ENST00000636770.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    125507259..125507307
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    128809584..128809632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)