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MIR548F3 microRNA 548f-3 [ Homo sapiens (human) ]

Gene ID: 100302159, updated on 10-Oct-2023

Summary

Official Symbol
MIR548F3provided by HGNC
Official Full Name
microRNA 548f-3provided by HGNC
Primary source
HGNC:HGNC:35307
See related
Ensembl:ENSG00000221436 miRBase:MI0006376; AllianceGenome:HGNC:35307
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MIR548F-3; MIRN548F3; hsa-mir-548f-3
Summary
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
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Genomic context

Location:
5q22.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (110513829..110513915, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (111024353..111024439, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (109849530..109849616, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379119 Neighboring gene long intergenic non-protein coding RNA 1848 Neighboring gene PGAM family member 5, mitochondrial serine/threonine protein phosphatase pseudogene 1 Neighboring gene Sharpr-MPRA regulatory region 2532 Neighboring gene NANOG hESC enhancer GRCh37_chr5:109328178-109328712 Neighboring gene transmembrane protein 232 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:109872134-109872982 Neighboring gene small nucleolar RNA SNORA51 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:110027790-110028290 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22884 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22885 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22886 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:110076045-110076546 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:110076547-110077046 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22887 Neighboring gene solute carrier family 25 member 46

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_031644.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AC012622
    Related
    ENST00000408509.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    110513829..110513915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    111024353..111024439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)