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if6 Eukaryotic translation initiation factor 6 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100301763, updated on 14-Dec-2023

Summary

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Gene symbol
if6
Gene description
Eukaryotic translation initiation factor 6
See related
Ensembl:ENSOMYG00000020201
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See if6 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
7
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 17 NC_048581.1 (36670778..36676746)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 17 NC_035093.1 (21957122..21969659)

Chromosome 17 - NC_048581.1Genomic Context describing neighboring genes Neighboring gene matrix metallopeptidase 24 Neighboring gene uncharacterized LOC110493843 Neighboring gene uncharacterized LOC118940420 Neighboring gene dynein, light chain, roadblock-type 1 Neighboring gene CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ribosomal large subunit binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in assembly of large subunit precursor of preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytosolic ribosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of 5.8S rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of LSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal subunit export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of preribosome, large subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Eukaryotic translation initiation factor 6; eukaryotic translation initiation factor 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001160592.2 → NP_001154064.1  Eukaryotic translation initiation factor 6

    See identical proteins and their annotated locations for NP_001154064.1

    Status: PROVISIONAL

    Source sequence(s)
    BT073291
    UniProtKB/TrEMBL
    A0A8C7NWE6, C1BFB2
    Related
    ENSOMYP00000043998.1, ENSOMYT00000047923.2
    Conserved Domains (1) summary
    PTZ00136
    Location:1 → 245
    PTZ00136; eukaryotic translation initiation factor 6-like protein; Provisional

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048581.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    36670778..36676746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021567427.2 → XP_021423102.1  eukaryotic translation initiation factor 6 isoform X1

    UniProtKB/TrEMBL
    A0A060WX89, A0A8C7NWE6
    Conserved Domains (1) summary
    PTZ00136
    Location:1 → 245
    PTZ00136; eukaryotic translation initiation factor 6-like protein; Provisional

  2. XM_021567428.2 → XP_021423103.1  eukaryotic translation initiation factor 6 isoform X1

    UniProtKB/TrEMBL
    A0A060WX89, A0A8C7NWE6
    Conserved Domains (1) summary
    PTZ00136
    Location:1 → 245
    PTZ00136; eukaryotic translation initiation factor 6-like protein; Provisional

  3. XM_021567429.2 → XP_021423104.1  eukaryotic translation initiation factor 6 isoform X1

    UniProtKB/TrEMBL
    A0A060WX89, A0A8C7NWE6
    Conserved Domains (1) summary
    PTZ00136
    Location:1 → 245
    PTZ00136; eukaryotic translation initiation factor 6-like protein; Provisional
Nucleotide Protein
Heading Accession and Version

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