U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

KDM5A lysine demethylase 5A [ Sus scrofa (pig) ]

Gene ID: 100294704, updated on 8-Mar-2024

Summary

Official Symbol
KDM5Aprovided by VGNC
Official Full Name
lysine demethylase 5Aprovided by VGNC
Primary source
VGNC:VGNC:89415
See related
Ensembl:ENSSSCG00000029464
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
JARID1A
Expression
Ubiquitous expression in spleen (RPKM 10.3), ovary (RPKM 9.1) and 8 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See KDM5A in Genome Data Viewer
Location:
chromosome: 5
Exon count:
28
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (67628791..67716143, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (70002191..70049249)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene solute carrier family 6 member 12 Neighboring gene solute carrier family 6 member 13 Neighboring gene uncharacterized LOC102165305 Neighboring gene coiled-coil domain containing 77 Neighboring gene beta-1,4-N-acetyl-galactosaminyltransferase 3

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
lysine-specific demethylase 5A
Names
jumonji AT-rich interactive domain 1A
lysine (K)-specific demethylase 5A

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    67628791..67716143 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021092486.1XP_020948145.1  lysine-specific demethylase 5A

    UniProtKB/TrEMBL
    A0A0B8RVS4, A0A287B933, A0A4X1UI45, A0A8D0WB57
    Related
    ENSSSCP00000052844.1, ENSSSCT00000044526.2
    Conserved Domains (8) summary
    smart00545
    Location:1859
    JmjN; Small domain found in the jumonji family of transcription factors
    smart01014
    Location:85170
    ARID; ARID/BRIGHT DNA binding domain
    pfam02373
    Location:470586
    JmjC; JmjC domain, hydroxylase
    cd15602
    Location:295343
    PHD1_KDM5A; PHD finger 1 found in Lysine-specific demethylase 5A (KDM5A)
    cd15606
    Location:11631215
    PHD2_KDM5A; PHD finger 2 found in Lysine-specific demethylase 5A (KDM5A)
    cd15686
    Location:16081659
    PHD3_KDM5A; PHD finger 3 found in Lysine-specific demethylase 5A (KDM5A)
    pfam02928
    Location:676728
    zf-C5HC2; C5HC2 zinc finger
    pfam08429
    Location:7411070
    PLU-1; PLU-1-like protein