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LOC100293612 uncharacterized LOC100293612 [ Homo sapiens (human) ]

Gene ID: 100293612, updated on 17-Sep-2024

Summary

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Gene symbol
LOC100293612
Gene description
uncharacterized LOC100293612
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC100293612 in Genome Data Viewer
Location:
3p25.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (13647113..13654178, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (13647586..13654658, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13521871-13522527 Neighboring gene Sharpr-MPRA regulatory region 12997 Neighboring gene histone deacetylase 11 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19492 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13557470-13558398 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13559772-13560661 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:13567399-13568002 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13573992-13574615 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13574616-13575238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13577465-13577965 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13584863-13585400 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13591988-13592596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13592597-13593203 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:13597673-13598460 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14087 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13600925-13601426 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13601427-13601926 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13610405-13611364 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13612969-13613685 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13618331-13619084 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13619085-13619838 Neighboring gene fibulin 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13639373-13639873 Neighboring gene Sharpr-MPRA regulatory region 12774 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13663487-13664060 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13664061-13664635 Neighboring gene small nucleolar RNA, H/ACA box 93 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19493 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13696034-13696534 Neighboring gene Sharpr-MPRA regulatory region 4110 Neighboring gene long intergenic non-protein coding RNA 620 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13716597-13717098 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13723071-13723616 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13738746-13739365 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13739985-13740604 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13742088-13742588 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:13769563-13770149 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:13770150-13770736 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13814826-13815326 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13822297-13822796 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13828435-13829175 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13829176-13829915 Neighboring gene tRNA suppressor (anticodon CTA) 2-1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:13834054-13834694 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13875041-13875541 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13876230-13876730 Neighboring gene Sharpr-MPRA regulatory region 1149 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13894067-13894571 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:13895244-13896443 Neighboring gene Wnt family member 7A Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:13920041-13920542 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13921045-13921546

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    13647113..13654178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_110033.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    13647586..13654658 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073337.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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