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LOC100289569 zinc finger protein 736 pseudogene [ Homo sapiens (human) ]

Gene ID: 100289569, updated on 12-Sep-2024

Summary

Gene symbol
LOC100289569
Gene description
zinc finger protein 736 pseudogene
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

Location:
5q21.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (106544099..106544496, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (107048621..107049018, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (105879800..105880197, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr5:105275636-105276417 Neighboring gene RNA, 5S ribosomal pseudogene 189 Neighboring gene MPRA-validated peak5393 silencer Neighboring gene MPRA-validated peak5394 silencer Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:105590357-105590959 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:105758794-105759294 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:105766695-105767195 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:105766194-105766694 Neighboring gene RUN and FYVE domain containing 3 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:105920305-105920824 Neighboring gene NANOG hESC enhancer GRCh37_chr5:106090731-106091273 Neighboring gene long intergenic non-protein coding RNA 1950 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:106314019-106314772 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:106319287-106320038 Neighboring gene NANOG hESC enhancer GRCh37_chr5:106454169-106454670 Neighboring gene proteasome 26S subunit, ATPase 1 pseudogene 5

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021860.3 

    Range
    101..498
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    106544099..106544496 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    107048621..107049018 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)