U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC03011 long intergenic non-protein coding RNA 3011 [ Homo sapiens (human) ]

Gene ID: 100289098, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC03011provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3011provided by HGNC
Primary source
HGNC:HGNC:56136
See related
Ensembl:ENSG00000237310
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GS1-124K5.4
Expression
Broad expression in testis (RPKM 6.2), fat (RPKM 1.8) and 17 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LINC03011 in Genome Data Viewer
Location:
7q11.21
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (66493632..66495474)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (67713276..67715122)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (65958619..65960461)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901855 Neighboring gene RABGEF1 pseudogene 2 Neighboring gene MPRA-validated peak6547 silencer Neighboring gene uncharacterized LOC107986704 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:65956208-65956813 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26083 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:65967883-65968382 Neighboring gene G protein subunit alpha 11 pseudogene Neighboring gene GTF2I repeat domain containing 1 pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr7:65981742-65982054 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:65995393-65996257 Neighboring gene RABGEF1 pseudogene 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. Brandenberger R, et al. Nat Biotechnol, 2004 Jun. PMID 15146197

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

Go to the top of the page Help

Markers

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134570.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC008267, CN310937, HY009490, HY106786
    Related
    ENST00000669130.1

  2. NR_134571.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site compared to variant 1.
    Source sequence(s)
    CN310937, CT005114, HY009490
    Related
    ENST00000445681.1

  3. NR_134572.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site compared to variant 1.
    Source sequence(s)
    AC008267, CN310937, HY009490
    Related
    ENST00000452565.1

  4. NR_134573.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate splice site compared to variant 1.
    Source sequence(s)
    CN310937, HY053797

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    66493632..66495474
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    67713276..67715122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials