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CCDC34P1 coiled-coil domain containing 34 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100288584, updated on 12-Sep-2024

Summary

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Official Symbol
CCDC34P1provided by HGNC
Official Full Name
coiled-coil domain containing 34 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:44008
See related
Ensembl:ENSG00000250556 AllianceGenome:HGNC:44008
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
4q25
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (112068006..112068528)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (115376364..115376886)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (112989162..112989684)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377367 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_72110 Neighboring gene VISTA enhancer hs926 Neighboring gene NANOG hESC enhancer GRCh37_chr4:112729243-112729823 Neighboring gene long intergenic non-protein coding RNA 2945 Neighboring gene uncharacterized LOC105377369 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15631 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15632 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:112982078-112982291 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21819 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:113003830-113005029 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:113007923-113008491 Neighboring gene tubulin beta 8 class VIII pseudogene 3 Neighboring gene ribosomal protein S12 pseudogene 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_022070.1 

    Range
    101..623
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    112068006..112068528
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    115376364..115376886
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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