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LOC100288146 nucleoporin Nup43-like [ Homo sapiens (human) ]

Gene ID: 100288146, updated on 17-Sep-2024

Summary

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Gene symbol
LOC100288146
Gene description
nucleoporin Nup43-like
See related
Ensembl:ENSG00000251473
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC100288146 in Genome Data Viewer
Location:
4q24
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (105102696..105104021, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (108413723..108415048, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (106023853..106025178, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377351 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:105836828-105837522 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21771 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21772 Neighboring gene RNA, U6 small nuclear 351, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21773 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21774 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21775 Neighboring gene uncharacterized LOC124900868 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21776 Neighboring gene NANOG hESC enhancer GRCh37_chr4:106064399-106064900 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15606 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21777 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21778 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15607 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:106083203-106083911 Neighboring gene tet methylcytosine dioxygenase 2 Neighboring gene TET2 antisense RNA 1 Neighboring gene RNA, 7SL, cytoplasmic 89, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_028839.2 

    Range
    101..1426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    105102696..105104021 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    108413723..108415048 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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