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LINC01699 long intergenic non-protein coding RNA 1699 [ Homo sapiens (human) ]

Gene ID: 100287948, updated on 17-Sep-2024

Summary

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Official Symbol
LINC01699provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1699provided by HGNC
Primary source
HGNC:HGNC:52487
See related
Ensembl:ENSG00000179452 AllianceGenome:HGNC:52487
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GM140
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01699 in Genome Data Viewer
Location:
1q25.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (181236388..181238604)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (180591821..180594037)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (181205524..181207740)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1602 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1603 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1604 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2173 Neighboring gene Sharpr-MPRA regulatory region 8031 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:181065969-181066485 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2174 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1605 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:181074489-181075383 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:181080957-181082156 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2175 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2176 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2177 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2178 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2179 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:181103703-181104902 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2181 Neighboring gene H3K4me1 hESC enhancers GRCh37_chr1:181110258-181110758 and GRCh37_chr1:181110759-181111259 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1608 Neighboring gene VISTA enhancer hs1862 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2184 Neighboring gene Sharpr-MPRA regulatory region 5219 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1609 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1610 Neighboring gene immediate early response 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:181151125-181151624 Neighboring gene long intergenic non-protein coding RNA 1732 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:181176185-181177094 Neighboring gene MPRA-validated peak492 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:181277357-181277857 Neighboring gene uncharacterized LOC107985454 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:181287535-181288165 Neighboring gene calcium voltage-gated channel subunit alpha1 E Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2185 Neighboring gene uncharacterized LOC107985232 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2186 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2187 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2188

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Identification of six novel genes by experimental validation of GeneMachine predicted genes. Makalowska I, et al. Gene, 2002 Feb 6. PMID 11891061

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046249.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF387616
    Related
    ENST00000319701.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    181236388..181238604
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    180591821..180594037
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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