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FAM90A26 family with sequence similarity 90 member A26 [ Homo sapiens (human) ]

Gene ID: 100287045, updated on 8-Mar-2024

Summary

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Official Symbol
FAM90A26provided by HGNC
Official Full Name
family with sequence similarity 90 member A26provided by HGNC
Primary source
HGNC:HGNC:43746
See related
Ensembl:ENSG00000229924 AllianceGenome:HGNC:43746
Gene type
protein coding
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM90A26P
Orthologs
all
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Genomic context

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Location:
4p16.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (9170409..9176730)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (9172135..9178456)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369250 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 10 Neighboring gene uncharacterized LOC124900663 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15266 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15267 Neighboring gene family with sequence similarity 86 member K, pseudogene Neighboring gene ALG1 like 14, pseudogene Neighboring gene beta-defensin 109-like Neighboring gene ubiquitin specific peptidase 17 like family member 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The BioPlex Network: A Systematic Exploration of the Human Interactome. Huttlin EL, et al. Cell, 2015 Jul 16. PMID 26186194, Free PMC Article
  2. Architecture of the human interactome defines protein communities and disease networks. Huttlin EL, et al. Nature, 2017 May 25. PMID 28514442, Free PMC Article
  3. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
putative protein FAM90A26
Names
family with sequence similarity 90, member A26, pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001358418.3 → NP_001345347.1  putative protein FAM90A26

    Status: INFERRED

    Source sequence(s)
    AC108519
    Consensus CDS
    CCDS87208.1
    UniProtKB/Swiss-Prot
    D6RGX4, Q658T7
    Related
    ENSP00000421131.1, ENST00000512047.2
    Conserved Domains (2) summary
    pfam15288
    Location:41 → 76
    zf-CCHC_6; Zinc knuckle
    cl26464
    Location:25 → 439
    Atrophin-1; Atrophin-1 family

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    9170409..9176730
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_032089.1: Suppressed sequence

    Description
    NG_032089.1: This RefSeq was removed because it is now thought that this locus is not a pseudogene.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
D6RGX4.1 GenPept UniProtKB/Swiss-Prot:D6RGX4

Gene LinkOut

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Molecular Biology Databases