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elovl1b ELOVL fatty acid elongase 1b [ Salmo salar (Atlantic salmon) ]

Gene ID: 100286454, updated on 8-Mar-2024

Summary

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Gene symbol
elovl1b
Gene description
ELOVL fatty acid elongase 1b
See related
Ensembl:ENSSSAG00000006209
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
elov1
Orthologs
zebrafish all
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Genomic context

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See elovl1b in Genome Data Viewer
Location:
chromosome: ssa16
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa16 NC_059457.1 (47320892..47354071)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa16 NC_027315.1 (47956257..47991104)

Chromosome ssa16 - NC_059457.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 275-like Neighboring gene MAPK interacting serine/threonine kinase 1 Neighboring gene MOB kinase activator 3C Neighboring gene zinc finger, FYVE domain containing 9b Neighboring gene basic transcription factor 3-like 4 Neighboring gene prostaglandin F receptor (FP)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fatty acid elongase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid elongation, monounsaturated fatty acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid elongation, polyunsaturated fatty acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid elongation, saturated fatty acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
elongation of very long chain fatty acids protein 1b
Names
Elongation of very long chain fatty acids protein 1
NP_001139865.1
XP_045552601.1
XP_045552602.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001146393.1 → NP_001139865.1  elongation of very long chain fatty acids protein 1b

    See identical proteins and their annotated locations for NP_001139865.1

    Status: PROVISIONAL

    Source sequence(s)
    BT056536
    UniProtKB/TrEMBL
    B9ELL1
    Related
    ENSSSAP00000012501.2, ENSSSAT00000013320.2
    Conserved Domains (1) summary
    pfam01151
    Location:28 → 268
    ELO; GNS1/SUR4 family

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059457.1 Reference Ssal_v3.1

    Range
    47320892..47354071
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045696646.1 → XP_045552602.1  elongation of very long chain fatty acids protein 1b isoform X1

  2. XM_045696645.1 → XP_045552601.1  elongation of very long chain fatty acids protein 1b isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials