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LOC100285848 uncharacterized LOC100285848 [ Zea mays ]

Gene ID: 100285848, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100285848
Gene description
uncharacterized LOC100285848
Locus tag
ZEAMMB73_Zm00001d008974
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
si707081g03; GRMZM2G072029
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Genomic context

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See LOC100285848 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 8 NC_050103.1 (27826470..27828787, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 8 NC_024466.2 (27985502..27987819, complement)

Chromosome 8 - NC_050103.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109941573 Neighboring gene uncharacterized LOC109941967 Neighboring gene Aspartate--tRNA ligase 2 cytoplasmic Neighboring gene 3-methyl-2-oxobutanoate hydroxymethyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  2. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Mitochondrial arginine transporter BAC2
Names
carnitine/acylcarnitine carrier-like protein
mitochondrial carnitine/acylcarnitine carrier-like protein
si707081g03(604)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001372341.1 → NP_001359270.1  Mitochondrial arginine transporter BAC2

    Status: VALIDATED

    Source sequence(s)
    DR789326, DR793693, DT653498, DV019934
    UniProtKB/TrEMBL
    A0A3L6DKI8, B4FWV8, B6UAL7
    Conserved Domains (1) summary
    pfam00153
    Location:237 → 322
    Mito_carr; Mitochondrial carrier protein

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050103.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    27826470..27828787 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001158738.1: Suppressed sequence

    Description
    NM_001158738.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

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