U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100285419 uncharacterized LOC100285419 [ Zea mays ]

Gene ID: 100285419, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100285419
Gene description
uncharacterized LOC100285419
Locus tag
ZEAMMB73_Zm00001d047273
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
cl9963_1; GRMZM2G078890
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100285419 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 9 NC_050104.1 (128677116..128681143, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 9 NC_024467.2 (125015181..125019166, complement)

Chromosome 9 - NC_050104.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100275113 Neighboring gene uncharacterized LOC100382703 Neighboring gene uncharacterized LOC118473392 Neighboring gene uncharacterized LOC109942251

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
Probable galacturonosyltransferase 11; uncharacterized protein LOC100285419
Names
cl9963_1(687)
putative galacturonosyltransferase 11
transferase, transferring glycosyl groups

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001158312.2 → NP_001151784.1  Probable galacturonosyltransferase 11

    See identical proteins and their annotated locations for NP_001151784.1

    Status: PROVISIONAL

    Source sequence(s)
    BT066565
    UniProtKB/TrEMBL
    A0A317YDG3, A0A3L6DE83, B6U4L9
    Conserved Domains (1) summary
    PLN02742
    Location:25 → 543
    PLN02742; Probable galacturonosyltransferase

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050104.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    128677116..128681143 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020543720.3 → XP_020399309.1  uncharacterized protein LOC100285419 isoform X1

    UniProtKB/TrEMBL
    A0A1D6K5P4
    Conserved Domains (1) summary
    cl28622
    Location:2 → 480
    PLN02870; Probable galacturonosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials