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LOC100284521 CMV 1a interacting protein 1 [ Zea mays ]

Gene ID: 100284521, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100284521
Gene description
CMV 1a interacting protein 1
Locus tag
ZEAMMB73_Zm00001d014284
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G005260
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Genomic context

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See LOC100284521 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 5 NC_050100.1 (39581349..39583706)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 5 NC_024463.2 (39393708..39396065)

Chromosome 5 - NC_050100.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein Q Neighboring gene uncharacterized LOC100275045 Neighboring gene Aquaporin PIP2-2 Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  2. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CMV 1a interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001157416.2 → NP_001150888.2  CMV 1a interacting protein 1

    Status: VALIDATED

    Source sequence(s)
    BT087945, DR799188
    UniProtKB/TrEMBL
    A0A1D6GRK2, A0A3L6ELU1, B6TUL7
    Conserved Domains (1) summary
    pfam13649
    Location:191 → 289
    Methyltransf_25; Methyltransferase domain

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050100.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    39581349..39583706
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008645561.2 → XP_008643783.1  CMV 1a interacting protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A804PBP1, B6TUL7
    Conserved Domains (1) summary
    pfam08241
    Location:192 → 293
    Methyltransf_11; Methyltransferase domain

  2. XM_020553392.1 → XP_020408981.1  CMV 1a interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A804PBH7, B6TUL7
    Conserved Domains (2) summary
    COG0500
    Location:122 → 302
    SmtA; SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only]
    pfam13649
    Location:188 → 261
    Methyltransf_25; Methyltransferase domain

  3. XM_035968081.1 → XP_035823974.1  CMV 1a interacting protein 1 isoform X3

    UniProtKB/TrEMBL
    B6TUL7
    Conserved Domains (1) summary
    pfam13649
    Location:188 → 261
    Methyltransf_25; Methyltransferase domain

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001175052.1: Suppressed sequence

    Description
    NM_001175052.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein
Heading Accession and Version

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