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LOC100284055 uncharacterized LOC100284055 [ Zea mays ]

Gene ID: 100284055, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100284055
Gene description
uncharacterized LOC100284055
Locus tag
ZEAMMB73_Zm00001d036158
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
gpm506; GRMZM2G364349
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Genomic context

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See LOC100284055 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 6 NC_050101.1 (81426714..81428433)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 6 NC_024464.2 (74946903..74948622)

Chromosome 6 - NC_050101.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene anthocyanidin 3-O-glucoside 6''-O-acyltransferase Neighboring gene transfer RNA glycine (anticodon GCC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Pectate lyase
Names
gnp_QBJ24d06
pectate lyase
putative pectate lyase 3
NP_001150425.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001156953.3 → NP_001150425.1  Pectate lyase precursor

    See identical proteins and their annotated locations for NP_001150425.1

    Status: VALIDATED

    Source sequence(s)
    BQ528438, BT084825, FL408457
    UniProtKB/TrEMBL
    A0A3L6E9F5, B6TPL1
    Conserved Domains (2) summary
    smart00656
    Location:180 → 374
    Amb_all; Amb_all domain
    pfam04431
    Location:45 → 92
    Pec_lyase_N; Pectate lyase, N terminus

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050101.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    81426714..81428433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials