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LOC100282607 polygalacturonase [ Zea mays ]

Gene ID: 100282607, updated on 14-Dec-2023

Summary

Gene symbol
LOC100282607
Gene description
polygalacturonase
Locus tag
ZEAMMB73_Zm00001d023813
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G113815
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Genomic context

See LOC100282607 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 10 NC_050105.1 (22699407..22703049, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 10 NC_024468.2 (22948346..22951988, complement)

Chromosome 10 - NC_050105.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103642344 Neighboring gene pathogenesis-related protein 10 Neighboring gene uncharacterized LOC103640940 Neighboring gene triacylglycerol lipase

Genomic regions, transcripts, and products

General protein information

Preferred Names
polygalacturonase
NP_001148987.1
XP_008661941.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001155515.1NP_001148987.1  polygalacturonase precursor

    See identical proteins and their annotated locations for NP_001148987.1

    Status: PROVISIONAL

    Source sequence(s)
    EU961611
    UniProtKB/TrEMBL
    A0A3L6GDB2, B6T9E6
    Conserved Domains (1) summary
    cl19188
    Location:39436
    PL-6; Polysaccharide Lyase Family 6

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050105.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    22699407..22703049 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008663719.3XP_008661941.1  polygalacturonase isoform X1

    UniProtKB/TrEMBL
    A0A804RDP5, A0A804RFV1
    Conserved Domains (1) summary
    cl19188
    Location:30427
    PL-6; Polysaccharide Lyase Family 6