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LOC100282552 uncharacterized LOC100282552 [ Zea mays ]

Gene ID: 100282552, updated on 6-Jun-2024

Summary

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Gene symbol
LOC100282552
Gene description
uncharacterized LOC100282552
Locus tag
ZEAMMB73_Zm00001d049326
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G391000
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Genomic context

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See LOC100282552 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (26899482..26905992)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (26475534..26481802)

Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene protein aq_1857 Neighboring gene U2 spliceosomal RNA Neighboring gene Sterile alpha motif (SAM) domain-containing protein Neighboring gene uncharacterized LOC100273307

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene discovery and annotation using LCM-454 transcriptome sequencing. Emrich SJ, et al. Genome Res, 2007 Jan. PMID 17095711, Free PMC Article
  2. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Lai J, et al. Genome Res, 2004 Oct. PMID 15466291, Free PMC Article
  3. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  4. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Probable galacturonosyltransferase 4; uncharacterized protein LOC100282552
Names
putative galacturonosyltransferase 4
transferase, transferring glycosyl groups

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001155460.2 → NP_001148932.2  Probable galacturonosyltransferase 4 isoform 1

    Status: VALIDATED

    Source sequence(s)
    BT065337, DT646737, DW886211, EU961404, GECS01000489
    UniProtKB/TrEMBL
    A0A1D6PTT7, K7TW94

  2. NM_001412115.1 → NP_001399044.1  Probable galacturonosyltransferase 4 isoform 2

    Status: VALIDATED

    Source sequence(s)
    BT065337, DT646737, DW886211, GECS01000489
    UniProtKB/TrEMBL
    A0A1D6PTT7, C0PAL8

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    26899482..26905992
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008679030.4 → XP_008677252.1  uncharacterized protein LOC100282552 isoform X1

    UniProtKB/TrEMBL
    C0PAL8
    Conserved Domains (1) summary
    cl28622
    Location:21 → 649
    PLN02870; Probable galacturonosyltransferase
Nucleotide Protein
Heading Accession and Version

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