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LOC100281927 uncharacterized LOC100281927 [ Zea mays ]

Gene ID: 100281927, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100281927
Gene description
uncharacterized LOC100281927
Locus tag
ZEAMMB73_Zm00001d018342
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
TPS9; gpm600; GRMZM2G122231
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Genomic context

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See LOC100281927 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 5 NC_050100.1 (221424758..221428531)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 5 NC_024463.2 (218888504..218892277)

Chromosome 5 - NC_050100.1Genomic Context describing neighboring genes Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene uncharacterized LOC100194283 Neighboring gene RING-H2 finger protein ATL2C Neighboring gene BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
  2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11
Names
gnp_QCC16f03
trehalose-6-phosphate synthase
trehalose-6-phosphate synthase11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001154846.2 → NP_001148318.2  Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11

    Status: VALIDATED

    Source sequence(s)
    BT068852, BT088285, CABHLF010000016, EE184708
    UniProtKB/TrEMBL
    A0A1D6HMX6, B6T0F0
    Conserved Domains (1) summary
    cl28137
    Location:1 → 834
    Glyco_transf_20; Glycosyltransferase family 20

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050100.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    221424758..221428531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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