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LOC100276419 uncharacterized LOC100276419 [ Zea mays ]

Gene ID: 100276419, updated on 14-Dec-2023

Summary

Gene symbol
LOC100276419
Gene description
uncharacterized LOC100276419
Locus tag
ZEAMMB73_Zm00001d029611
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G053946
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Genomic context

See LOC100276419 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (78544731..78549473, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (79332079..79336821, complement)

Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene mechanosensitive ion channel protein 2, chloroplastic Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC103636874 Neighboring gene uncharacterized LOC118476017

Genomic regions, transcripts, and products

General protein information

Preferred Names
Arabinosyltransferase RRA3-like; uncharacterized protein LOC100276419

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374056.1NP_001360985.1  Arabinosyltransferase RRA3-like

    Status: VALIDATED

    Source sequence(s)
    BT037178, CO529565, DN205614, DV504854, EC903758
    UniProtKB/TrEMBL
    A0A1D6K6A8, B4FJ90
    Conserved Domains (1) summary
    pfam03407
    Location:180403
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    78544731..78549473 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035965609.1XP_035821502.1  uncharacterized protein LOC100276419 isoform X1

    UniProtKB/TrEMBL
    A0A317Y239, A0A317Y248, A0A804LM70, B6TAQ7
    Conserved Domains (1) summary
    pfam03407
    Location:118341
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
  2. XM_035965610.1XP_035821503.1  uncharacterized protein LOC100276419 isoform X1

    UniProtKB/TrEMBL
    A0A317Y239, A0A317Y248, A0A804LM70, B6TAQ7
    Conserved Domains (1) summary
    pfam03407
    Location:118341
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase

RNA

  1. XR_562986.2 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001150217.1: Suppressed sequence

    Description
    NM_001150217.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.