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LOC100274276 uncharacterized LOC100274276 [ Zea mays ]

Gene ID: 100274276, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100274276
Gene description
uncharacterized LOC100274276
Locus tag
ZEAMMB73_Zm00001d015086
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM5G858310
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Genomic context

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See LOC100274276 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
16
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 5 NC_050100.1 (74821348..74833695, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 5 NC_024463.2 (74944004..74956351, complement)

Chromosome 5 - NC_050100.1Genomic Context describing neighboring genes Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein Neighboring gene Protein LOW PSII ACCUMULATION 2 chloroplastic Neighboring gene 3-isopropylmalate dehydratase large subunit 2 Neighboring gene CBL-interacting protein kinase 9-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA N2-guanine methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Probable tRNA (guanine(26)-N(2))-dimethyltransferase 2-like; uncharacterized protein LOC100274276
Names
putative tRNA (guanine(26)-N(2))-dimethyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001148640.1 → NP_001142112.1  Probable tRNA (guanine(26)-N(2))-dimethyltransferase 2-like isoform 1

    See identical proteins and their annotated locations for NP_001142112.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) has the rarely observed splice donor for the eighth intron.
    Source sequence(s)
    BT042660
    UniProtKB/TrEMBL
    A0A1D6GZ76, B4FZX2
    Conserved Domains (1) summary
    cl17173
    Location:51 → 288
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  2. NM_001360566.1 → NP_001347495.1  Probable tRNA (guanine(26)-N(2))-dimethyltransferase 2-like isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has the frequently observed splice donor for the eighth intron.
    Source sequence(s)
    BT042660, CABHLF010000004, DR828679, DT940437
    UniProtKB/TrEMBL
    A0A1D6GZ72, A0A3L6ELL6, A0A804PE70
    Conserved Domains (1) summary
    cl17173
    Location:51 → 462
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050100.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    74821348..74833695 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035967838.1 → XP_035823731.1  uncharacterized protein LOC100274276 isoform X4

    UniProtKB/TrEMBL
    A0A1D6GZ72, A0A3L6ELL6
    Conserved Domains (1) summary
    cl17173
    Location:51 → 429
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  2. XM_008683328.3 → XP_008681550.1  uncharacterized protein LOC100274276 isoform X1

    UniProtKB/TrEMBL
    A0A1D6GZ72, A0A1D6GZ75, A0A3L6ELL6
    Conserved Domains (1) summary
    cl17173
    Location:51 → 461
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  3. XM_008683329.4 → XP_008681551.1  uncharacterized protein LOC100274276 isoform X2

    UniProtKB/TrEMBL
    A0A1D6GZ72, A0A3L6ELL6
    Conserved Domains (1) summary
    cl17173
    Location:51 → 453
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  4. XM_008683330.4 → XP_008681552.1  uncharacterized protein LOC100274276 isoform X3

    UniProtKB/TrEMBL
    A0A1D6GZ72, A0A3L6ELL6
    Conserved Domains (1) summary
    cl17173
    Location:51 → 430
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  5. XM_008683331.4 → XP_008681553.1  uncharacterized protein LOC100274276 isoform X7

    UniProtKB/TrEMBL
    A0A1D6GZ80
    Conserved Domains (1) summary
    cl17173
    Location:1 → 280
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  6. XM_020553184.2 → XP_020408773.1  uncharacterized protein LOC100274276 isoform X6

    Conserved Domains (1) summary
    cl17173
    Location:27 → 412
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  7. XM_020553183.2 → XP_020408772.1  uncharacterized protein LOC100274276 isoform X5

    Conserved Domains (1) summary
    cl17173
    Location:27 → 413
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

RNA

  1. XR_002269412.3 RNA Sequence

  2. XR_004858144.1 RNA Sequence

  3. XR_004858146.1 RNA Sequence

  4. XR_004858145.1 RNA Sequence

  5. XR_004858147.1 RNA Sequence

  6. XR_004858148.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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