U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

EOLA2-DT EOLA2 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100272228, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
EOLA2-DTprovided by HGNC
Official Full Name
EOLA2 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:48579
See related
Ensembl:ENSG00000235703 AllianceGenome:HGNC:48579
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00894
Expression
Ubiquitous expression in prostate (RPKM 4.2), thyroid (RPKM 3.9) and 25 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
Xq28
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (149938548..150016787)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (148206174..148284407)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (149106766..149185018)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene MAGEA8 antisense RNA 1 Neighboring gene MAGE family member A8 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21047 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21046 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21049 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21048 Neighboring gene heat shock transcription factor family, X-linked member 4 Neighboring gene endothelium and lymphocyte associated ASCH domain 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:149289377-149289876 Neighboring gene nucleolar protein 11 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:149385283-149385784 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:149385785-149386284 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chrX:149387913-149388449 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chrX:149393501-149394088 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chrX:149394089-149394674 Neighboring gene microRNA 2114

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Downregulation of LINC00894-002 Contributes to Tamoxifen Resistance by Enhancing the TGF-β Signaling Pathway. Zhang X, et al. Biochemistry (Mosc), 2018 May. PMID 29738694
  2. Molecular and phenotypic variation in patients with severe Hunter syndrome. Timms KM, et al. Hum Mol Genet, 1997 Mar. PMID 9147653
  3. High-throughput analyses of hnRNP H1 dissects its multi-functional aspect. Uren PJ, et al. RNA Biol, 2016. PMID 26760575, Free PMC Article
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Other Names

  • long intergenic non-protein coding RNA 894

Clone Names

  • FLJ30251, FLJ44451

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027456.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC244099, BC032484, DA306809
    Related
    ENST00000444489.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    149938548..150016787
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    148206174..148284407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.