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RPS15AP27 ribosomal protein S15a pseudogene 27 [ Homo sapiens (human) ]

Gene ID: 100271613, updated on 17-Jun-2024

Summary

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Official Symbol
RPS15AP27provided by HGNC
Official Full Name
ribosomal protein S15a pseudogene 27provided by HGNC
Primary source
HGNC:HGNC:37011
See related
Ensembl:ENSG00000236783 AllianceGenome:HGNC:37011
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS15A_15_1003
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Genomic context

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See RPS15AP27 in Genome Data Viewer
Location:
9q31.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (107963661..107964075, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (120132190..120132604, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (110725942..110726356, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene small EDRK-rich factor 2-like Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:110634669-110635552 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28753 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28754 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28755 Neighboring gene RNA, 5S ribosomal pseudogene 293 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_104396 Neighboring gene melanoma risk locus-associated MPRA allelic enhancers 9:110702889 and 9:110702983 Neighboring gene melanoma risk locus-associated MPRA allelic enhancer 9:110708974 Neighboring gene uncharacterized LOC107987112 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:110762694-110763893 Neighboring gene uncharacterized LOC124902243 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:110779148-110780347 Neighboring gene ribosomal protein L31 pseudogene 43

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011314.1 

    Range
    101..515
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    107963661..107964075 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    120132190..120132604 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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