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LARRPM LINC00240 antisense RNA regulating promoter methylation [ Homo sapiens (human) ]

Gene ID: 100270746, updated on 10-Oct-2023

Summary

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Official Symbol
LARRPMprovided by HGNC
Official Full Name
LINC00240 antisense RNA regulating promoter methylationprovided by HGNC
Primary source
HGNC:HGNC:56664
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LARRPM in Genome Data Viewer
Location:
6p22.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (27019366..27020306, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (26887863..26888802, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (26987145..26988085, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901290 Neighboring gene tRNA-Ala (anticodon AGC) 14-2 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:26845091-26845270 Neighboring gene POM121 transmembrane nucleoporin like 6, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:26853600-26854455 Neighboring gene GUSB pseudogene 2 Neighboring gene NANOG hESC enhancer GRCh37_chr6:26876271-26876881 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:26924432-26925130 Neighboring gene long intergenic non-protein coding RNA 240 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24256 Neighboring gene tRNA-Ile (anticodon TAT) 2-2 Neighboring gene vomeronasal 1 receptor 12, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. LARRPM restricts lung adenocarcinoma progression and M2 macrophage polarization through epigenetically regulating LINC00240 and CSF1. Li Y, et al. Cell Mol Biol Lett, 2022 Oct 11. PMID 36221069, Free PMC Article
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026776.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590062, CK823122, DA812657

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    27019366..27020306 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    26887863..26888802 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
Molecular Biology Databases