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LOC100267547 uncharacterized LOC100267547 [ Vitis vinifera (wine grape) ]

Gene ID: 100267547, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100267547
Gene description
uncharacterized LOC100267547
Locus tag
VIT_00006266001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100267547 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 7 NC_081811.1 (21798360..21804020, complement)
102 previous assembly 12X (GCF_000003745.3) Unplaced Scaffold NW_003724300.1 (36442..42121)

Chromosome 7 - NC_081811.1Genomic Context describing neighboring genes Neighboring gene protein ASYMMETRIC LEAVES 2 Neighboring gene conserved oligomeric Golgi complex subunit 1 Neighboring gene endoglucanase 12 Neighboring gene beta-hexosaminidase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dolichol-linked oligosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of UDP-N-acetylglucosamine transferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC100267547
Names
UDP-N-acetylglucosamine transferase subunit ALG13 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081811.1 Reference ASM3070453v1 Primary Assembly

    Range
    21798360..21804020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002265870.5 → XP_002265906.2  uncharacterized protein LOC100267547

    See identical proteins and their annotated locations for XP_002265906.2

    UniProtKB/TrEMBL
    A5AJP8, D7SSJ1
    Conserved Domains (1) summary
    pfam04101
    Location:13 → 172
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  2. XM_010648540.3 → XP_010646842.1  uncharacterized protein LOC100267547

    See identical proteins and their annotated locations for XP_010646842.1

    UniProtKB/TrEMBL
    A5AJP8, D7SSJ1
    Conserved Domains (1) summary
    pfam04101
    Location:13 → 172
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  3. XM_019218378.2 → XP_019073923.1  uncharacterized protein LOC100267547

    UniProtKB/TrEMBL
    A5AJP8, D7SSJ1
Nucleotide Protein
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