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LOC100266759 sucrose synthase 7 [ Vitis vinifera (wine grape) ]

Gene ID: 100266759, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100266759
Gene description
sucrose synthase 7
Locus tag
VIT_00035210001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100266759 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 4 NC_081808.1 (10684600..10688988)
102 previous assembly 12X (GCF_000003745.3) 4 NC_012010.3 (10519097..10523477)

Chromosome 4 - NC_081808.1Genomic Context describing neighboring genes Neighboring gene cytosolic sulfotransferase 12 Neighboring gene cytosolic sulfotransferase 12 Neighboring gene probable leucine-rich repeat receptor-like protein kinase At1g35710 Neighboring gene uncharacterized LOC100247879

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081808.1 Reference ASM3070453v1 Primary Assembly

    Range
    10684600..10688988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010650590.3 → XP_010648892.1  sucrose synthase 7

    UniProtKB/TrEMBL
    F6HFV4
    Conserved Domains (3) summary
    PLN00142
    Location:1 → 815
    PLN00142; sucrose synthase
    pfam00534
    Location:573 → 751
    Glycos_transf_1; Glycosyl transferases group 1
    pfam00862
    Location:17 → 557
    Sucrose_synth; Sucrose synthase
Nucleotide Protein
Heading Accession and Version

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Research Materials