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LOC100266466 probable beta-1,4-xylosyltransferase IRX14H [ Vitis vinifera (wine grape) ]

Gene ID: 100266466, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100266466
Gene description
probable beta-1,4-xylosyltransferase IRX14H
Locus tag
VIT_00022064001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100266466 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 7 NC_081811.1 (26959017..26966378, complement)
102 previous assembly 12X (GCF_000003745.3) 7 NC_012013.3 (16305672..16312995, complement)

Chromosome 7 - NC_081811.1Genomic Context describing neighboring genes Neighboring gene UPF0481 protein At3g47200 Neighboring gene cysteine proteinase mucunain Neighboring gene uncharacterized LOC132254103 Neighboring gene probable WRKY transcription factor 7 Neighboring gene uncharacterized LOC100249291

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX14H

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081811.1 Reference ASM3070453v1 Primary Assembly

    Range
    26959017..26966378 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002283213.4 → XP_002283249.1  probable beta-1,4-xylosyltransferase IRX14H

    UniProtKB/TrEMBL
    A0A438FBB3, F6H4F9
    Conserved Domains (1) summary
    pfam03360
    Location:186 → 425
    Glyco_transf_43; Glycosyltransferase family 43
Nucleotide Protein
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