U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100264849 pectin acetylesterase 12 [ Vitis vinifera (wine grape) ]

Gene ID: 100264849, updated on 23-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100264849
Gene description
pectin acetylesterase 12
Locus tag
VIT_00031342001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100264849 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 14 NC_081818.1 (300634..308181)
102 previous assembly 12X (GCF_000003745.3) 14 NC_012020.3 (230309..237875)

Chromosome 14 - NC_081818.1Genomic Context describing neighboring genes Neighboring gene flap endonuclease 1 Neighboring gene protein NRT1/ PTR FAMILY 4.5 Neighboring gene transcription factor MYB61 Neighboring gene uncharacterized LOC104878676

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectin acetylesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plant-type cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
pectin acetylesterase 12
Names
protein notum homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081818.1 Reference ASM3070453v1 Primary Assembly

    Range
    300634..308181
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002278994.5 → XP_002279030.1  pectin acetylesterase 12

    UniProtKB/TrEMBL
    A0A438GYN9, F6I4I8
    Conserved Domains (1) summary
    pfam03283
    Location:55 → 402
    PAE; Pectinacetylesterase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials