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LOC100264552 probable cellulose synthase A catalytic subunit 9 [UDP-forming]-like [ Vitis vinifera (wine grape) ]

Gene ID: 100264552, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100264552
Gene description
probable cellulose synthase A catalytic subunit 9 [UDP-forming]-like
Locus tag
VIT_00022285001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100264552 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 7 NC_081811.1 (28860841..28869293, complement)
102 previous assembly 12X (GCF_000003745.3) 7 NC_012013.3 (18214304..18222747, complement)

Chromosome 7 - NC_081811.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein uL11m-like Neighboring gene uncharacterized LOC104879929 Neighboring gene egg cell-secreted protein 1.4-like Neighboring gene transfer RNA histidin (anticodon GUG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. Velasco R, et al. PLoS One, 2007 Dec 19. PMID 18094749, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 2 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081811.1 Reference ASM3070453v1 Primary Assembly

    Range
    28860841..28869293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002277599.4 → XP_002277635.1  cellulose synthase A catalytic subunit 2 [UDP-forming]

    See identical proteins and their annotated locations for XP_002277635.1

    UniProtKB/TrEMBL
    A5BQN2, F6H4C8
    Conserved Domains (3) summary
    PLN02436
    Location:1 → 1097
    PLN02436; cellulose synthase A
    pfam14569
    Location:32 → 97
    zf-UDP; Zinc-binding RING-finger
    cl11394
    Location:539 → 848
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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