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LOC100264056 probable galacturonosyltransferase 12 [ Vitis vinifera (wine grape) ]

Gene ID: 100264056, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100264056
Gene description
probable galacturonosyltransferase 12
Locus tag
VIT_00014592001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100264056 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 19 NC_081823.1 (5400569..5403880, complement)
102 previous assembly 12X (GCF_000003745.3) 19 NC_012025.3 (5411343..5414647, complement)

Chromosome 19 - NC_081823.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100253680 Neighboring gene putative zinc finger protein CONSTANS-LIKE 11 Neighboring gene disease resistance protein At4g27190 Neighboring gene probable disease resistance protein At4g27220

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081823.1 Reference ASM3070453v1 Primary Assembly

    Range
    5400569..5403880 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002282601.5 → XP_002282637.2  probable galacturonosyltransferase 12

    See identical proteins and their annotated locations for XP_002282637.2

    UniProtKB/TrEMBL
    A5AP33, E0CT53
    Conserved Domains (1) summary
    PLN02659
    Location:1 → 533
    PLN02659; Probable galacturonosyltransferase
Nucleotide Protein
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Research Materials