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LOC100261910 mannan endo-1,4-beta-mannosidase 5 [ Vitis vinifera (wine grape) ]

Gene ID: 100261910, updated on 19-Jun-2024

Summary

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Gene symbol
LOC100261910
Gene description
mannan endo-1,4-beta-mannosidase 5
Locus tag
VIT_00037214001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100261910 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 18 NC_081822.1 (35246967..35249016, complement)
102 previous assembly 12X (GCF_000003745.3) 18 NC_012024.3 (27919120..27921130, complement)

Chromosome 18 - NC_081822.1Genomic Context describing neighboring genes Neighboring gene mannan endo-1,4-beta-mannosidase 5-like Neighboring gene mannan endo-1,4-beta-mannosidase 5 Neighboring gene mannan endo-1,4-beta-mannosidase 5-like Neighboring gene mannan endo-1,4-beta-mannosidase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mannan endo-1,4-beta-mannosidase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081822.1 Reference ASM3070453v1 Primary Assembly

    Range
    35246967..35249016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002272531.5 → XP_002272567.1  mannan endo-1,4-beta-mannosidase 5

    See identical proteins and their annotated locations for XP_002272567.1

    UniProtKB/TrEMBL
    A0A438FJ86, D7SN13
    Conserved Domains (1) summary
    cl23725
    Location:102 → 328
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein
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